Welcome to metadex’s documentation!

Contents:

• Download the Sample Data Set
  • Get Study Information from MG-RAST
  • Download Gene Counts Matrix from MG-RAST
  • Getting Annotations from MG-RAST
• An Example Workflow with a Sample Data Set (Lagoons)
  • Reading Annotations from Study into Metadex
  • Load Gene Counts Matrix into Study
  • Output
  • Determining Genes of Interest
  • Normalising Counts
  • Annotating with Lineage Information
  • Sidebar: Loading Study Counts into Metadex
  • Focusing on Gene (User Query)
  • Visualising Diversity for Gene

Indices and tables

• Index
• Module Index
• Search Page